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Publications (2007)

Alster, A., Zohary, T.  2007.  Interactions between the bloom-forming dinoflagellate Peridinium gatunense and the chytrid fungus Phlyctochytrium sp.Hydrobiologia, 578:131-139

Amar, K.O., Chadwick, N.E., Rinkevich, B. 2007. Coral planulae as dispersion vehicles: biological properties of larvae released early and late in the season. Mar. Ecol. Prog. Ser., 350:71-78

Amar, K.O., Rinkevich, B. 2007.  A floating mid-water coral nursery as larval dispersion hub: testing an idea. Mar. Biol., 151(2):713-718

Aoyama, M., Becker, S., Dai, M., Daimon, H., Gordon, L.I., Kasai, H., Kerouel, R., Kress, N., Masten, D., Murata, A., Nagai, N., Ogawa, H., Ota, H., Saito, H., Saito, K., Shimizu, T., Takano, H., Tsuda, A., Yokouchi, K., Youenou, A. 2007.  Recent comparability of oceanographic nutrients data results of a 2003 intercomparison exercise using reference materials. Anal. Sci., 23:1151-1154

Avarre, J.-C., Lubzens, E., Babin, P.J.  2007.  Apolipocrustacein, formerly vitellogenin, is the major egg yolk precursor protein in decapod crustaceans and is homologous to insect apolipophorin II/I and vertebrate apolipoprotein B. BMC Evol. Biol., 7:3

Babin, P.J., Carnevali, O., Lubzens, E., Schneider, W.J. 2007. Molecular aspects of oocyte vitellogenesis in fish. In: Babin, P.J., Cerda, J., Lubzens, E. (Eds.), The fish oocyte: from basic studies to biotechnological applications. Springer, pp. 39-76

Babin, P.J., Cerda, J., Lubzens, E. (Eds.).  2007. The fish oocyte: from basic studies to biotechnological applications. Springer, 510 p.

Baki Yokes, M., Karhan, S.U., Okus, E., Yuksek, A., Aslan-Yilmaz, A., Yilmaz, I.N., Demirel, N., Demir, V., Galil, B.S. 2007. Alien crustacean decapods from the Aegean coast of Turkey. Aquat. Invasions, 2(3):162-168 

Berman, T., Passow, U. 2007.  Transparent Exopolymer Particles (TEP): an overlooked factor in the process of biofilm formation in aquatic environments. Nature Precedings, doi: 10.1038/npre.2007.1182.1

Bogi., C., Galil, B.S. 2007. First record of Theora (Endopleura) lubrica Gould, 1861 (Mollusca: Bivalvia: Semelidae) from a Levantine port. Aquat. Invasions, 2(1):77-79

Bogi, C., Galil, B.S.   2007. Setia levantina n.sp., una nuova specie di Rissoidae dalle coste Israeliane. Boll. Malacol., 43(9-12):171-173

Boscarino, B.T., Rudstam, L.G., Mata, S., Gal, G., Johannsson, O.E., Mills, E.L.2007. The effects of temperature and predator-prey interactions on the migration behavior and vertical distribution of Mysisrelicta. Limnol. Oceanogr., 52(4):1599-1613

Boulus, A., Spaneir, E., Friedlander, M. 2007.  Effect of outdoor conditions on growth rate and chemical coposition of Gelidium crinale in culture. J. Appl. Phycol., 19(5):471-478

Brenner, S., Gertman, I., Murashkovsky, A  2007.  Preoperational ocean forecasting in the southeastern Mediterranean Sea: implementation and evaluation of the models and selection of the atmospheric forcing. J. Mar. Syst., 65(1-4):268-287

Burnett, W.C., Santos, I.R. Weinstein, Y., Swarzenski, P.W., Herut, B.   2007.  Remaining uncertainties in the use of Rn-222 as a quantitative tracer of submarine groundwater discharge. In: Sanford, W., Langevin, C., Polemio, M., Provinec., P., (Eds.), A new focus on groundwater-seawater interactions. (IAHS Publ. 312). IAHS, pp. 109-118

Clark, P.F., Galil, B.S., Poore, G.C.B.  2007.  A new species of Calaxius Sakai & de saint Laurent, 1989, from West Africa (Crustacea: Decapoda: Axiidae) and synonymy of Manaxius Kensley, 2003. Proc. Biol. Soc. Wash., 120(1):63-73

Cohen, R., Chalifa-Caspi, V., Williams, T.D., Auslander, M., George, S.G., Chipman, J.K., Tom, M. 2007. Estimating the efficiency of fish cross-species cDNA microarray hybridization. Mar. Biotechnol., 9(4):491-499

Corbera, J., Galil, B.S.  2007. Colonisation of the eastern Mediterranean by Red Sea cumaceans, with the description of a new species. Sci. Mar., 71(1):29-36

Cuadrado, M., Albinyana, G., Padros, F., Redondo, M.J., Sitja-Bobadilla, A., Alvarez-Pellitero, P., Palenzuela, O., Diamant, A., Crespo, S. 2007. An unidentified epi-epithelial myxosporean in the intestine of gilthead sea bream Sparus aurata L. Parasitol. Res., 101(2):403-411

Diamant, A., Colorni, A., Ucko, M. 2007. Parasite and disease transfer between cultured and wild coastal marine fish. CIESM Workshop Monogr., (32):49-53

Diamant, A., Lipshitz, A., Ucko, M.  2007.  Phylogeny of Coccomyxa (Myxosporea: Myxidiidae) spp. with the description of a new species from Bathygobius cyclopterus (Gobiidae) in the northern Red Sea. Folia Parasitol., 54(2):109-116

Eckert, W., Conrad, R. 2007. Sulfide and methane evolution in the hypolimnion of a subtropical lake: a three-year study. Biogeochemistry, 82(1):67-76

Einav, R., Israel, A. 2007. Seaweeds on the abrasion platforms of the intertidal zone of Esatern Mediterranean shores. In: Seckbach, J. (Ed.), Algae and Cyanobacteria in extreme environments.(Cellular origin, life in extreme habitats and astrobiology, 11). Springer, pp. 195-210

Funkenstein, B., Rebhan, Y.  2007.  Expression, purification, renaturation and activation of fish myostatin expressed in Escherichia coli: facilitation of refolding and activity inhibition by myostatin prodomain. Protein Expr. Purif., 54(1):54-65

Galil, B.S.  2007.  Loss or gain? Invasive aliens and biodiversity in the Mediterranean Sea. Mar. Pollut. Bull., 55(7-9):314-322

Galil, B.S. 2007. Seeing red: alien species along the Mediterranean coast of Israel. Aquat. Invasions, 2(4):281-312

Galil, B.S. 2007. The deep-water Calappidae, Matutidae and Leucosiidae of the Solomon Islands, with a description of a new species of Euclosia Galil, 2003 (Crustacea, Decapoda, Brachyura). Zoosystema, 29(3):555-563

Galil, B.S., Nehring, S., Panov, V.  2007.  Waterways as invasion highways impact of climate change and globalization. In: Nentwig, W. (Ed.), Biological invasions. (Ecological studies, 193). Springer, pp. 59-74

Galil, B.S., Ng, P.K.L. 2007.  Leucosiid crabs from Panglao, Philippines, with descriptions of three new species (Crustacea: Decapoda: Brachyura). Raffles Bull. Zool., Suppl. 16:79-94

Gochman, E., Reznick, A.Z., Avizohar, O., Ben-Amotz, A., Levy, Y. 2007. Exhaustive exercise modifies oxidative stress in smoking subjects. Am. J. Med. Sci., 333(6):346-353

Golani, D., Reef-Motro, R., Ekshtein, S., Baranes, A., Diamant, A.   2007. Ichthyofauna of the rocky littoral of the Israeli Mediterranean, with reference to the paucity of Red Sea (Lessepsian) migrants in this habitat. Mar. Biol. Res., 3:333-341

Hambright, K.D., Zohary, T., Gude, H.  2007. Microzooplankton dominate carbon flow and nutrient cycling in a warm subtropical freshwater lake. Limnol. Oceanogr., 52(3):1018-1025

Innocenti, G., Galil, B.S. 2007. Modus vivendi: invasive host/parasite relations Charybdis longicollis Leene, 1938 (Brachyura: Portunidae) and Heterosaccus dollfusi Boschma, 1960 (Rhizocephalia: Sacculinidae). Hydrobiologia, 590(1):95-101

Junier, P., Witzel, K.-P., Hadas, O. 2007. Genetic diversity of cyanobacterial communities in Lake Kinneret (Israel) using 16S rRNA gene, psbA and ntcA sequence analyses. Aquat. Microb. Ecol., 49(3):233-241

Kamenir, Y., Dubinsky, Z., Alster, A., Zohary, T.  2007.  Stable patterns in size structure of a phytoplankton species of Lake Kinneret. Hydrobiologia, 578:79-86

Klein, M., Zviely, D., Kit, E., Shteinman, B. 2007. Sediment transport along the coast of Israel: examination of fluorescent sand tracers. J. Coast. Res., 23(6):1462-1470

Kocak, M., Kubilay, N., Herut, B., Nimmo, M.  2007. Trace metal solid state speciation in aerosols of the northern Levantine Basin, East Mediterranean. J. Atmos. Chem., 56:239-257

Kunstmann, H., Suppan, P., Heckl, A., Rimmer, A.  2007. Regional climate change in the Middle East and impact on hydrology in the Upper Jordan Catchment. In: Proceedings of the Symposium on Quantification and Reduction of Predictive Uncertainty for Sustainable Water Resources Management, Perugia, July 2007. (IAHS Publ. 313). IAHS, pp. 141-149

Kurzbaum, E., Eckert, W., Yacobi, Y.Z.  2007. Delayed fluorescence as a direct indicator of diurnal variation in quantum and radiant energy utilization efficiencies of phytoplankton. Photosynthetica, 45(4):562-567

Lai, J.C., Galil, B.S. 2007. A new species of Matuta Weber, 1795 (Crustacea, Decapoda, Matutidae) from Java, Indonesia.. Raffles Bull. Zool., Suppl. 16:75-77

Levy, M.G., Poore, M.F., Colorni, A., Noga, E.J., Vandersea, M.W., Litaker, R.W.   2007.  A highly specific PCR assay for detecting the fish ectoparasite Amyloodinium ocellatum. Dis. Aquat. Org., 73(3):219-226

Loongyai, W., Avarre, J.-C., Cerutti, M., Lubzens, E., Chotigeat, W. 2007. Isolation and functional characterization of a new shrimp ovarian peritrophin with antimicrobial activity from Fenneropenaeus merguiensis. Mar. Biotechnol., 9(5):624-637

Man-Aharonovich, D., Kress, N., Bar Zeev, E., Berman-Frank, I., Beja, O.  2007. Molecular ecology of nifH genes and transcripts in the eastern Mediterranean Sea. Environ. Microbiol., 9(9):2354-2363

Neori, A., Krom, M.D., van Rijn, J. 2007. Biogeochemical processes in intensive zero-effluent marine fish culture with recirculating aerobic and anaerobic biofilters. J. Exp. Mar. Biol. Ecol., 349:235-247

Neori, A., Troell, M., Chopin, T., Yarish, C., Critchley, A., Buschmann, A.H.  2007.  The need for a balanced ecosystem approach to blue revolution aquaculture. Environment, 49(3):36-43

Oren, M., Douek, J., Fishelson, Z., Rinkevich, B.  2007.  Identification of immune-relevant genes in histoincompatible rejecting colonies of the tunicate Botryllus schlosseri. Dev. Comp. Immunol., 31(9):889-902

Ostrovsky, I., Sukenik, A.  2007.  Spatial heterogeneity of biogeochemical parameters in a subtropical lake. In: Mohanty, P.K., (Ed.), Lakes and coastal wetlands: conservation, restoration and mangaement. Capital, pp. 96-107

Parparov, A., Hambright, K.D. 2007. Composite water quality: evaluation and management  feedbacks. Wat. Qual. Res. J. Can., 42(1):20-25

Pasternak, Z., Diamant, A., Abelson, A.  2007. Co-invasion of a Red Sea fish and its ectoparasitic monogenean, Polylabris cf. mamaevi into the Mediterranean: observations on oncomiracidium behavior and infection levels in both seas. Parasitol. Res., 100(4):721-727

Poltronieri, C., Maccatrozzo, L., Simontacchi, C., Bertotto, D., Funkenstein, B., Patruno, M., Radaelli, G.  2007.  Quantitative RT-PCR analysis and immunohistochemical localization of HSP70 in sea bass Dicentrarchus labrax exposed to transport stress. Eur. J. Histochem., 51(2):125-135

Reshef, M., Ben-Avraham, Z., Tibor, G., Marco, S. 2007. The use of acoustic imaging to reveal fossil fluvial systems: a case study from the southwestern Sea of Galilee. Geomorphology, 83(1-2):58-66

Rimmer, A. 2007. Systems hydrology models for the Upper Catchments of the Jordan River and Lake Kinneret, Israel. Isr. J. Earth Sci., 56(1): 1-17

Rinkevich, B.  2007. Separating the wheat from the chaff: the interplay of science and environmental management decision through a critical examination of the literature. J. Exp. Mar. Biol. Ecol., 344(2):229-237

Rinkevich, Y., Douek, J., Haber, O., Rinkevich, B., Reshef, R. 2007.  Urochordate whole body regeneration inaugurates a diverse innate immune signaling profile. Dev. Biol., 312(1):131-146

Rinkevich, Y., Paz, G., Rinkevich, B., Reshef, R.   2007.  Systemic bud induction and retinoid acid signaling underlie whole body regeneration in the urochordate Botrylloides leachi. PloS Biol., 5(4):900-913

Roelke, D.L., Zohary, T., Hambright, K.D., Montoya, J.V.  2007.  Alternative states in the phytoplankton of Lake Kinneret, Israel (Sea of Galilee). Freshwat. Biol., 52:399-411

Rosenfeld, H., Meiri, I., Elizur, A. 2007. Gonadotropic regulation of oocyte development. In: Babin, P.J., Cerda, J., Lubzens, E. (Eds.), The fish oocyte: from basic studies to biotechnological applications. Springer, pp. 175-202

Rosentraub, Z., Brenner, S.  2007. Circulation over the southeastern continental shelf and slope of the Mediterranean Sea: direct current measurements, winds, and numerical model simulations. J. Geophys. Res., 112, C11001, doi:10.1029/2006JC003775

Rosner, A., Rabinowitz, C., Moiseeva, E., Voskoboynik, A., Rinkevich,B. 2007.  BS-cadherin in the colonial urochordate Botryllus schlosseri: one protein, many functions. Dev. Biol., 304:687-700

Rosner, A., Rinkevich, B. 2007. The DDX subfamily of the DEAD box helicases: divergent roles as unveiled by studying different organisms and in vitro assays. Curr. Med. Chem., 14:2517-2525

Schatz, D., Keren, Y., Vardi, A., Sukenik, A., Carmeli, S., Borner, T., Dittmann, E., Kaplan, A. 2007. Towards clarification of the biological role of microcyctins, a family of cyanobacterial toxins. Environ. Microbiol., 9(4):965-970

Schwarz, J.I.K., Eckert, W., Conrad, R. 2007. Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel). Syst. Appl. Microbiol., 30(3):239-254

Schwarz, J.I.K., Lueders, T., Eckert, W., Conrad, R.  2007.  Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA. Environ. Microbiol., 9(1):223-237

Shafir, S., Van Rijn, J., Rinkevich, B. 2007. Short and long term toxicity of crude oil and oil dispersants to two representative coral species. Environ. Sci. Technol., 41(15):5571-5574

Shaish, L., Abelson, A., Rinkevich, B. 2007.  How plastic can phenotypic plasticity be? The branching coral Stylophora pistillata as a model system. PloS ONE, 2(7):e644

Shilo, E., Ashkenazy, Y., Rimmer, A., Assouline, S., Katsafados, P., Mahrer, Y. 2007.  Effect of wind variability on topographic waves: Lake Kinneret case. J. Geophys. Res., 112, C12024, doi: 10.1029/2007JC004336

Shoham-Frider, E., Shelef, G., Kress, N. 2007. Mercury speciation in sediments at a municipal sewage sludge marine disposal site. Mar. Environ. Res., 64(5):601-615

Shpigel, M., Neori, A. 2007.  Microalgae, macroalgae, and bivalves as biofilters in land-based mariculture in Israel In: Bert, T.M. (Ed.), Ecological and genetic implications of aquaculture activities. (Methods and technologies in fish biology and fisheries, 6). Springer, pp. 433-446

Sitja-Bobadilla, A., Diamant, A., Palenzuela, O., Alvarez-Pellitero, P.  2007. Effect of host factors and experimental conditions on the horizontal transmission of Enteromyxum leei (Myxozoa) to gilthead sea bream, Sparus aurata L., and European sea bass, Dicentrarchus labrax (L.). J. Fish Dis., 30(4):243-250

Sukenik, A., Beardall, J., Hadas, O.  2007. Photosynthetic characterization of developing and mature akinetes of Aphanizomenon ovalisporum (Cyanoprokaryota). J. Phycol., 43:780-788

Tanaka, T., Zohary, T., Krom, M.D., Law, C.S., Pitta, P., Psarra, S., Rassoulzadegan, F., Thingstad, T.F., Tselepides, A., Woodward, E.M.S., Flaten, G.A.F., Skjoldal, E.F., Zodiatis, G. 2007. Microbial community structure and function in the Levantine Basin of the eastern Mediterranean. Deep-Sea Res. I, 54:1721-1743

Vardi, A., Eisenstadt, D., Murik, O., Berman-Frank, I. Zohary, T., Levine, A., Kaplan, A.  2007.  Synchronization of cell death in a dinoflagellate population is mediated by an excreted thiol protease. Environ. Microbiol., 9(2):360-369

Voskoboynik, A., Simon-Blecher, N., Soen, Y., Rinkevich, B., De Tomaso, A.W., Ishizuka, K.J., Weissman, I.L.  2007.  Striving for normality: whole body regeneration through a series of abnormal generations. FASEB J., 21(7)1335-1344

Weinstein, Y., Burnett, W.C., Swarzenski, P.W., Shalem, Y., Yechieli, Y., Herut, B.  2007. Role of aquifer heterogeneity in fresh groundwater discharge and seawater recycling: an example from the Carmel coast, Israel. J. Geophys. Res. (C), 112, C12016, doi:10.1029/2007JC004112

Weinstein, Y., Shalem, Y., Burnett, W.C., Swarzenski, P.W., Herut, B. 2007.  Temporal variability of submarine groundwater discharge: assessments via radon and seep meters, the southern Carmel Coast, Israel. In: Sanford, W., Langevin, C., Polemio, M., Provinec., P., (Eds.), A new focus on groundwater-seawater interactions. (IAHS Publ. 312). IAHS, pp. 125-133

Yacobi., Y.Z., Perel, N., Barkan, E., Luz, B.  2007.  Unexpected underestimation of primary productivity by 18O and 14C methods in a lake: implications for slow diffusion of isotope tracres in and out of cells. Limnol. Oceanogr., 52(1):329-337

Yip, M.J., Porter, J.L., Fyfe, J.A.M., Lavender, C.J.. Portaels, F., Rhodes, M., Kator, H., Colorni, A., Jenkin, G.A., Stinear, T.  2007.  Evolution of Mycobacterium ulcerans and other mycolactone-producing mycobacteria from a common Mycobacterium marinum progenitor. J. Bacteriol., 189(5):2021-2029

Yudkovski, Y., Shechter, A., Chalifa-Caspi, V., Auslander, M., Ophir, R., Dauphin-Villemant, C., Waterman, M., Sagi., A., Tom, M. 2007.  Hepatopancreatic multi-transcript expression patterns in the crayfish Cherax quadricarinatus during the moult cycle. Insect Mol. Biol., 16(6):661-674 

Zhang, L., Altabet, M.A., Wu, T., Hadas, O.   2007. Sensitive measurement of
NH4+ 15N/14N ( delta15NH4+) at natural abundance levels in fresh and saltwaters. Anal. Chem., 79:5297-5303

Zhang, T., Rawson, D.M., Pekarsky, I., Blais, I.,Lubzens, E. 2007. Low-temperature preservation of fish gonad cells and oocytes. In: Babin, P.J., Cerda, J., Lubzens, E. (Eds.), The fish oocyte: from basic studies to biotechnological applications. Springer, pp. 411-436

Zilberman-Peled, B., Appelbaum, L., Vallone, D., Foulkes, N.S., Anava, S., Anzulovich, A., Coon, S.L., Klein, D.C., Falcon, J., Ron, B., Gothilf, Y. 2007. Transcriptional regulation of arylakylamine-N-acetyltransferase-2 gene in the pineal gland of the gilthead seabream. J. Neuroendocrinol., 19(1):46-53
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